{"id":356,"date":"2025-11-12T16:16:35","date_gmt":"2025-11-12T16:16:35","guid":{"rendered":"https:\/\/articulateinstruments.com\/new\/?page_id=356"},"modified":"2025-12-10T11:07:01","modified_gmt":"2025-12-10T11:07:01","slug":"matlab-r-packages","status":"publish","type":"page","link":"http:\/\/articulateinstruments.com\/new\/matlab-r-packages\/","title":{"rendered":"Matlab &amp; R packages"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-page\" data-elementor-id=\"356\" class=\"elementor elementor-356\">\n\t\t\t\t<div class=\"elementor-element elementor-element-8ed9290 e-flex e-con-boxed e-con e-parent\" data-id=\"8ed9290\" data-element_type=\"container\" data-e-type=\"container\">\n\t\t\t\t\t<div class=\"e-con-inner\">\n\t\t\t\t<div class=\"elementor-element elementor-element-94dbd17 elementor-widget elementor-widget-text-editor\" data-id=\"94dbd17\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t\t\t\t\t\t<p>We cannot vouch for these tools.<\/p><p><strong>R Utilities <img decoding=\"async\" class=\"alignnone  wp-image-1123\" src=\"http:\/\/articulateinstruments.com\/new\/wp-content\/uploads\/2025\/12\/R-statistics.jpg\" alt=\"\" width=\"32\" height=\"25\" srcset=\"http:\/\/articulateinstruments.com\/new\/wp-content\/uploads\/2025\/12\/R-statistics.jpg 724w, http:\/\/articulateinstruments.com\/new\/wp-content\/uploads\/2025\/12\/R-statistics-300x235.jpg 300w\" sizes=\"(max-width: 32px) 100vw, 32px\" \/><\/strong><\/p><p><strong>R<\/strong>\u00a0<a href=\"https:\/\/cran.r-project.org\/\">https:\/\/cran.r-project.org\/<\/a><br \/><strong>Rstudio<\/strong>\u00a0<a href=\"https:\/\/www.rstudio.com\/products\/rstudio\/download2\/\">https:\/\/www.rstudio.com\/products\/rstudio\/download2\/<\/a><\/p><p><strong>Rticulate<\/strong>: Ultrasound Tongue Imaging in R (Stefano Coretta Manchester)(2016)<br \/><a href=\"https:\/\/github.com\/stefanocoretta\/rticulate\">https:\/\/github.com\/stefanocoretta\/rticulate<\/a><br \/>This package provides two functions for importing UTI data from Articulate Assistant Advanced and plotting UTI data from any source.<\/p><p><strong>ultRa<\/strong>\u00a0(Richard Beare LaTrobe Australia) (2016)<br \/>An R package containing functions to manipulate speech ultrasound data obtained with Articulatory Instruments AAA software.<br \/><a href=\"https:\/\/github.com\/richardbeare\/ultRa\">https:\/\/github.com\/richardbeare\/ultRa<\/a><\/p><p><strong>SSANOVA with R tutorials<\/strong>\u00a0(2016)<br \/><a href=\"http:\/\/corpling.uis.georgetown.edu\/shuoz\/ssanova\/index.php\">http:\/\/corpling.uis.georgetown.edu\/shuoz\/ssanova\/index.php<\/a><br \/>Smoothing splines for measuring difference between two sets of splines. Paper by Lisa Davidson (2006) on this website .<\/p><p><strong>North Carolina State University Phonology Lab<\/strong>\u00a0(Jeff Mielke)<br \/><a href=\"https:\/\/phon.wordpress.ncsu.edu\/lab-manual\/ultrasound-and-video\/working-with-data\/\">https:\/\/phon.wordpress.ncsu.edu\/lab-manual\/ultrasound-and-video\/working-with-data\/<\/a><br \/><strong>tongue_ssanova.r<\/strong>\u00a0amongst other scripts described in detail on this page. Includes polar version of SSANOVA more suited to tongue contour data. \u00a0<\/p><p><strong>PYTHON scripts\u00a0 <img decoding=\"async\" class=\"alignnone  wp-image-1124\" src=\"http:\/\/articulateinstruments.com\/new\/wp-content\/uploads\/2025\/12\/Python.jpg\" alt=\"\" width=\"115\" height=\"28\" srcset=\"http:\/\/articulateinstruments.com\/new\/wp-content\/uploads\/2025\/12\/Python.jpg 513w, http:\/\/articulateinstruments.com\/new\/wp-content\/uploads\/2025\/12\/Python-300x74.jpg 300w\" sizes=\"(max-width: 115px) 100vw, 115px\" \/><\/strong><\/p><p><strong>Tongue shape analysis metrics<\/strong>\u00a0(Kathryn Dawson)<br \/><a href=\"https:\/\/github.com\/kdawson2\/tshape_analysis\">https:\/\/github.com\/kdawson2\/tshape_analysis<\/a><br \/>This script contains code for several shape analysis metrics designed to be used on contours taken from ultrasound images of the tongue. The analysis metrics are:<\/p><ul><li>Procrustes analysis<\/li><li>Modified Curvature Index<\/li><li>Fourier analysis of the tongue profile<\/li><\/ul><p><strong>UltraSuite Data and Tools<\/strong>\u00a0(ULTRAX project)<br \/><a href=\"http:\/\/www.ultrax-speech.org\/ultrasuite\">http:\/\/www.ultrax-speech.org\/ultrasuite<\/a><br \/>This is a repository for ultrasound child speech data stored in a similar format to that which can be exported from AAA. It includes python scripts for reading and displaying data held in this format.<\/p><p><strong>UltraTrace ultrasound annotation tool<\/strong>\u00a0(Jonathan Washington)<br \/><a href=\"https:\/\/github.com\/SwatPhonLab\/UltraTrace\">https:\/\/github.com\/SwatPhonLab\/UltraTrace<\/a><br \/>GUI for creating textgrid output based on *.wav or *.flac files and ultrasound tongue imaging data in DICOM or AAA *.ult format.<\/p><p><strong>MATLAB\u00a0 <img decoding=\"async\" class=\"alignnone  wp-image-1122\" src=\"http:\/\/articulateinstruments.com\/new\/wp-content\/uploads\/2025\/12\/MATLAB.jpg\" alt=\"\" width=\"102\" height=\"29\" \/><\/strong><\/p><p><strong>Ultramat<\/strong>\u00a0(Thomas Hueber)<br \/><a href=\"http:\/\/ultraspeech.com\/web\/index.php?page=ultramat\">http:\/\/ultraspeech.com\/web\/index.php?page=ultramat<\/a><br \/>Implements the EigenTongue approach which is a statistical technique consisting in encoding an ultrasound frame by its projections onto a set of standard (tongue) configurations.<\/p><p>See also\u00a0<strong>North Carolina State University Phonology Laboratory<\/strong>\u00a0for MATLAB code (link in R section above)<\/p><p><strong>GetContours<\/strong>\u00a0developed by Mark Tiede at Haskins can be downloaded here.<br \/><a href=\"https:\/\/github.com\/mktiede\/GetContours\">https:\/\/github.com\/mktiede\/GetContours<\/a><\/p><p><strong>SLURP<\/strong>\u00a0(Cathy Laporte at Montreal) This tracker built on top of the GetContours MATLAB GUI uses particle filtering to track the tongue contour using a hand &#8220;seeded&#8221; frame.<br \/><a href=\"https:\/\/github.com\/cathylaporte\/SLURP\">https:\/\/github.com\/cathylaporte\/SLURP<\/a>\u00a0\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>We cannot vouch for these tools. R Utilities R\u00a0https:\/\/cran.r-project.org\/Rstudio\u00a0https:\/\/www.rstudio.com\/products\/rstudio\/download2\/ Rticulate: Ultrasound Tongue Imaging in R (Stefano Coretta Manchester)(2016)https:\/\/github.com\/stefanocoretta\/rticulateThis package provides [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"site-sidebar-layout":"no-sidebar","site-content-layout":"","ast-site-content-layout":"full-width-container","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"disabled","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"class_list":["post-356","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/articulateinstruments.com\/new\/wp-json\/wp\/v2\/pages\/356","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/articulateinstruments.com\/new\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/articulateinstruments.com\/new\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/articulateinstruments.com\/new\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"http:\/\/articulateinstruments.com\/new\/wp-json\/wp\/v2\/comments?post=356"}],"version-history":[{"count":10,"href":"http:\/\/articulateinstruments.com\/new\/wp-json\/wp\/v2\/pages\/356\/revisions"}],"predecessor-version":[{"id":1133,"href":"http:\/\/articulateinstruments.com\/new\/wp-json\/wp\/v2\/pages\/356\/revisions\/1133"}],"wp:attachment":[{"href":"http:\/\/articulateinstruments.com\/new\/wp-json\/wp\/v2\/media?parent=356"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}